If you already ran phredPhrap or phredPhrepPoly scripts,
you can run PolyPhred or Polytool.
1) Polytool is graphical interface for running PolyPhred.
Polytool write output into polyphred_output file.
2) For running Polytool you need to put polyphred version 3.5 to one
of the directories, listed in PATH variable. To check wich are
those directories you shold type:
Also you need to have Motif libraries installed on your
computer. If Motif libraries are not located in /usr/lib before
running polytool you should type :
setenv LD_LIBRARY_PATH library_path
For example, if they are located in /usr/Motif/lib yoy type:
setenv LD_LIBRARY_PATH /usr/Motif/lib